Introspective teletext - /b/ (#937965037) [Archived: 148 hours ago]

Anonymous
8/3/2025, 6:05:06 PM No.937965037
f0ffd578e1da3966c0469ba6a416b51c2ecd9ed5
f0ffd578e1da3966c0469ba6a416b51c2ecd9ed5
md5: 3e0cad2f98aa739f49515629cf85f5d8🔍
> The spontaneous folding of small, single-domain globular proteins, such as villin headpiece subdomain HP35, occurs on the microsecond timescale via a stochastic diffusion-collision mechanism along a rugged free energy landscape governed by the interplay of enthalpic contributions from intramolecular hydrogen bonding, van der Waals packing interactions, and hydrophobic collapse, counterbalanced by entropic penalties associated with conformational restriction, all of which are modulated by solvent-accessible surface area and mediated through solvent reorganization dynamics; this process can be quantitatively modeled using all-atom molecular dynamics simulations with explicit solvent (e.g., TIP3P water model) under the CHARMM36m force field, and validated experimentally through time-resolved Förster resonance energy transfer (FRET) and φ-value analysis, revealing folding transition states that exhibit partial secondary structure.
Replies: >>937967189
Anonymous
8/3/2025, 7:04:25 PM No.937967189
>>937965037 (OP)
so are you trying to say that it is possible for a protein to fold instantly? the rate of the reaction is what it takes for a molecule to rearrange from it's current conformation to a new one