>>149242339Plenty of options, really. Lets look at the components of this outcome:
> Omega the person cannot use her powers> Omega the machine still exists and can be used by the court> No damage was done during her villain arc> nothing was sacrificed to defeat herYou get meaningful consequences if you change literally any one of these factors.
For example, an Omega that has joined Annie's team WITHOUT losing her powers now offers a powerful tool that they can use to try and fix the distortion, and then provide a benefit to the protagonists after the distortion ends because one of their primary groups of antagonists (the court) relies upon Omega so a friendly Omega turns into a secret weapon in the future
If Omega (the person) is defeated by destroying Omega (the machine) then the Court has been denied its omniscient supercomputer and when the plot resumes after the distortion arc the court can now be BEATEN because it is has been denied its predictive supercomputer that knows everything you are going to do before you do it.
The arc also could have been given meaning if Omega had either done something that hindered the heroes that was not easily fixed or ignored (destroying Kat's lab, killing a character, etc) as opposed to short term inconvenient for fake-stakes (kidnapping some people into an explicitly non-dangerous situation)... or if the heroes had to use some valuable resource or make some other sacrifice in order to bring Omega down, leaving them at a disadvantage going into the next part of the story facing Loup/Zimmy and resolving the distortion.
As is, the Omega arc does NOTHING that feeds into the rest of the story, which is what makes it bad. There are lots of better things they could have done instead, but those didn't happen.