>>16823996
I should add, in many cases the basal genes that were expressed in the fossil lineages still exist but are dormant in extant lineages, so it's a relatively simple matter of turning them back on to restore limbs etc.
for example:
>We identified snake-specific sequence changes within an otherwise highly conserved long-range limb enhancer of Sonic hedgehog (Shh). Transgenic mouse reporter assays revealed that the in vivo activity pattern of the enhancer is conserved across a wide range of vertebrates, including fish, but not in snakes. Genomic substitution of the mouse enhancer with its human or fish ortholog results in normal limb development. In contrast, replacement with snake orthologs caused severe limb reduction. Synthetic restoration of a single transcription factor binding site lost in the snake lineage reinstated full in vivo function to the snake enhancer.
>>16824002
Dunno what you're trying to say, that the look of the living animal doesn't intuitively match what you'd expect from the skeleton? Sure, but we can at least mimic the skeletal morphology and limb development with reasonable fidelity, that's 75% of the work.