Did y'all do Lily's Bond Episodes in Nikke yet? There's an interesting series of conversations she has with Elegg about the nature of Nikkes and how they seem so human.

It is also slightly concerning given that Lily never grappled with the idea that she's not human. If she did, would she then have become interested enough to dissect herself to find out how she was made? Maybe it's not that concerning since she her definition of what a human is includes technology and she treated the reconstruction of Enya more like a medical procedure than a repair job.