20.67 Snake-Eye (19.67 Millennium Fiendsmith Snake-Eye, 0.5 Millennium Kashtira Fiendsmith Snake-Eye)
14 Crystron (13 Millennium Crystron, 1 Horus Crystron)
12.33 Primite Blue-Eyes
6 Atlantean
5.83 Tenpai Dragon (5.5 Tenpai Dragon, 0.33 Sky Striker Tenpai Dragon)
5.33 Branded (4.33 Grass Branded, 0.5 Branded)
4 Memento
2 Gimmick Puppet
2 Melodious
1 Fiendsmith Kashtira Tearlaments
1 Fiendsmith Yubel
1 Kashtira Fiendsmith White Forest
1 Millennium P.U.N.K. Fiendsmith Goblin Biker
1 Superheavy Samurai Melodious Dracoslayer
0.5 Bystial Fiendsmith
0.33 Superheavy Samurai FTK
Of the Top 100 players, currently only 78 players and their decks have been made known.

Unlike traditional tournaments where players are locked into a single deck after submitting their deck lists, the Master Duel World Championship 2025 Qualifiers allow players to freely switch between decks. For this tabulation, if the player ran multiple different decks, then the weightage of each deck will be divided by the total decks played. For example, サーモン finished in global rank 29th and played 3 different decks during their Duelist Cup grind, thus contributing 0.33 Millennium Fiendsmith Snake-Eye, 0.33 Primite Blue-Eyes and 0.33 Sky Striker Tenpai Dragon to the overall tally.